| User | Application | URL | Description |
| adcworks | Java3D Molecular Visualisation System | http://www.adcworks.com/projects/jmvs | A protein data bank (PDB) viewer offering ribbons, spacefill and skeleton display modes and various colour schemes. |
| Anycpu | Tower of Hanoi | http://projects.anycpu.com/toh/ | Classic "Tower of Hanoi" puzzle visualization |
| CAIDA | Walrus | http://www.caida.org/tools/visualization/walrus/ | Walrus is a tool for interactively visualizing large directed graphs in three-dimensional space |
| Dakine Wave Limited | Desktop Buddy | http://dakinewave.com/buddy/ | Desktop Buddy is a 3D character that will read RSS news feeds, eBooks and web pages and give you task reminders. |
| Dakine Wave Limited | VirtualStage | http://dakinewave.com/virtualstage/ | VirtualStage was one of the first, if not the first, purpose built machinima toolkits and enables users to create their own 3D animated dramas. |
| Danilo Balby Silva Castanheira | UnBBoolean's API | http://www.geocities.com/danbalby/ | API to apply boolean set operations for Java3D |
| Decision Systems Group, Brigham and Women's Hospital | TraumaSCAN-Web | http://dsg.harvard.edu/~oogunyem/traumascan/ | TraumaSCAN-Web is a platform-independent decision support system that assists with the diagnosis of penetrating trauma to the chest and abdomen. |
| Eclectic3D | J3DWorkbench | http://eclectic3d.net | An open source, extensible, real-time, WYSIWYG, 3D visualization, simulation, and game-design authoring tool. Integrates Java3D and the RCP framework from Eclipse using SWT_AWT. |
| Galaxy3D? team | Galaxy3D? | http://galaxy3d.outpost-4.com/ | turn-based cosmic strategy game |
| Halden VR Centre, IFE | DESIRE RadVis | http://www2.hrp.no/vr/products/radvis/info/index.html | Cosmic radiation visualisation tool that can also be used as a VRML97/X3D viewer |
| Halden VR Centre, IFE | HVRC CREATE | http://www2.hrp.no/vr/products/create/info/index.html | Collaborative human-centered design and review suite |
| Halden VR Centre, IFE | HVRC LOD Tool | http://www2.hrp.no/vr/products/lodtool/info/index.html | LOD generator/editor for processing VRML geometry |
| IBM | River | http://www.alphaworks.ibm.com/tech/river | Easy-to-use 3D visualization system |
| IFAD TS A/S | TacticalTrainer | http://www.ifad.dk/index.php?option=com_content&task=view&id=14&Itemid=30 | Multiuser command and team training system |
| indie technologies | Genesis FX | http://www.indietechnologies.com/index.html | A commercial particle system for 3D game special effects |
| HerKules | FlyingGuns | http://www.flyingguns.com/ | Realtime, distributed simulation and flightsim game |
| Mobile Excellence B.V. & Lensoft International Ltd. | Sudoku-Ball? | http://www.sudoku-ball.com/ | A unique version of the Sudoku puzzle. The unique challenge is to solve a 14 Samurai Sudoku network on a spherical object such that the entire network is closed in all directions. The game is powered by Java3D |
| Pacific Defense Solutions | jSim | http://pacificds.com/services.html | Advanced event simulation and visualization toolkit using Java and Java3D. |
| eTeks | Sweet Home 3D | http://sweethome3d.sourceforge.net/ | Sweet Home 3D is an interior design application that helps you to arrange your furniture on a house 2D plan, with a 3D preview. |
| Research Imaging Center | Mango | http://ric.uthscsa.edu/mango | An interactive slice viewer and surface viewer for medical image volumes. Includes built-in support for a number of image formats, including DICOM. |
| SourceForge Project | jCAE | http://jcae.sourceforge.net | A JAVA based environment for CAE applications. It provides meshing and visualization capabilities. It is targetted to run on a maximal number of platform. |
| Surgical Planning Laboratory, Brigham & Women's Hospital | SPLViz | http://splweb.bwh.harvard.edu/.../splviz.html | 3D visualisation tool for surgical planning |
| Structural Informatics Group, University of Washington | MindSeer (aka. BrainJ3D) | http://sig.biostr.washington.edu/projects/MindSeer/ | A next-generation brain visualizer. |
| LION Bioscience | SRS3D? | http://www.lionbioscience.com/ | Molecular modeling app |
| NETCAE Solutions | 3D Viewer | http://www.netcae.com/ | Visualization, sharing and collaboration of 3D and 2D data that enable effective digital communication. |
| Project Looking Glass | lg3d | https://lg3d.dev.java.net/ | Open source, experimental 3D desktop |
| Psychomad | RadDoom | http://sourceforge.net/projects/raddoom/ | RadDoom is a radiosity scene renderer that use "Dynamic Surface Subdivision". It's write in Java and Java3D. It enables, in real time, the user to travel in the 3D scene during rendering. |
| suppechasper | BT4Dsign | http://www.aec-ii.ch/forschung/bt/software.html | FDM-Tool for stability-problems on rod alike structures |
| suppechasper | jgeom | https://jgeom.dev.java.net/ | 3D Geometry Library including NURBS, Subdivision Surfaces and Boolean Operators |
| University of Bonn, Cartography Research Group | XNavigator | http://www.gdi-3d.de | Online Viewer for the Virtual City Model of Heidelberg, Germany. XNavigator can be started directly as Java Webstart Application |
| VWP | Java XTools | http://www.3dchat.org/dev.php | A package of useful classes, functionalitys and extensions (not only) for Java3D |
| VWP | Virtual Universe | http://www.3dchat.org | Virtual Reality environmend with immersive user interface |
| Washington University School of Medicine, Saint Louis, Missouri | FFE | http://dasher.wustl.edu/ffe/ | Force field explorer for computational chemistry and molecular engineering |
| Zypher | 3D Simulation Engine | http://wiki.java.net/bin/view/People/Zyberactivecat | Prototype 3D Engine for simulation or more |
| GraXML | Graphical Framework for Particle Physics | http://cern.ch/hrivnac/Activities/Packages/GraXML | Framework for manipulation and visualisation of particle physics geometrical objects in space |
| HEP3D | Java3D Objects for Particle Physics | http://cern.ch/hrivnac/Activities/Packages/HEP3D | Shapes and utilities usefull in particle physics |